admiral - ADaM in R Asset Library
A toolbox for programming Clinical Data Interchange Standards Consortium (CDISC) compliant Analysis Data Model (ADaM) datasets in R. ADaM datasets are a mandatory part of any New Drug or Biologics License Application submitted to the United States Food and Drug Administration (FDA). Analysis derivations are implemented in accordance with the "Analysis Data Model Implementation Guide" (CDISC Analysis Data Model Team, 2021, <https://www.cdisc.org/standards/foundational/adam>).
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adamcdiscclinical-trialsopen-sourcepharmaverse
14.99 score 323 stars 7 dependents 1.1k scripts 3.6k downloads
rtables - Reporting Tables
Reporting tables often have structure that goes beyond simple rectangular data. The 'rtables' package provides a framework for declaring complex multi-level tabulations and then applying them to data. This framework models both tabulation and the resulting tables as hierarchical, tree-like objects which support sibling sub-tables, arbitrary splitting or grouping of data in row and column dimensions, cells containing multiple values, and the concept of contextual summary computations. A convenient pipe-able interface is provided for declaring table layouts and the corresponding computations, and then applying them to data.
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pharmaceuticalstables
13.94 score 260 stars 20 dependents 654 scripts 7.3k downloads
teal - Exploratory Web Apps for Analyzing Clinical Trials Data
A 'shiny' based interactive exploration framework for analyzing clinical trials data. 'teal' currently provides a dynamic filtering facility and different data viewers. 'teal' 'shiny' applications are built using standard 'shiny' modules.
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clinical-trialsnestshinywebapp
12.97 score 263 stars 6 dependents 292 scripts 858 downloads
cards - Analysis Results Data
Construct CDISC (Clinical Data Interchange Standards Consortium) compliant Analysis Results Data objects. These objects are used and re-used to construct summary tables, visualizations, and written reports. The package also exports utilities for working with these objects and creating new Analysis Results Data objects.
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analysiscdiscdataset
12.60 score 61 stars 61 dependents 289 scripts 51k downloads
tern - Create Common TLGs Used in Clinical Trials
Table, Listings, and Graphs (TLG) library for common outputs used in clinical trials.
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clinical-trialsgraphslistingsnestoutputstables
12.55 score 107 stars 12 dependents 697 scripts 2.6k downloads
admiraldev - Utility Functions and Development Tools for the Admiral Package Family
Utility functions to check data, variables and conditions for functions used in 'admiral' and 'admiral' extension packages. Additional utility helper functions to assist developers with maintaining documentation, testing and general upkeep of 'admiral' and 'admiral' extension packages.
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12.05 score 22 stars 11 dependents 310 scripts 3.5k downloads
ggsurvfit - Flexible Time-to-Event Figures
Ease the creation of time-to-event (i.e. survival) endpoint figures. The modular functions create figures ready for publication. Each of the functions that add to or modify the figure are written as proper 'ggplot2' geoms or stat methods, allowing the functions from this package to be combined with any function or customization from 'ggplot2' and other 'ggplot2' extension packages.
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11.81 score 105 stars 8 dependents 1.5k scripts 7.9k downloads
r2rtf - Easily Create Production-Ready Rich Text Format (RTF) Tables and Figures
Create production-ready Rich Text Format (RTF) tables and figures with flexible format.
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11.10 score 85 stars 14 dependents 210 scripts 7.5k downloadsteal.modules.clinical - 'teal' Modules for Standard Clinical Outputs
Provides user-friendly tools for creating and customizing clinical trial reports. By leveraging the 'teal' framework, this package provides 'teal' modules to easily create an interactive panel that allows for seamless adjustments to data presentation, thereby streamlining the creation of detailed and accurate reports.
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clinical-trialsmodulesnestoutputsshiny
10.81 score 42 stars 1 dependents 297 scripts 731 downloads
cardx - Extra Analysis Results Data Utilities
Create extra Analysis Results Data (ARD) summary objects. The package supplements the simple ARD functions from the 'cards' package, exporting functions to put statistical results in the ARD format. These objects are used and re-used to construct summary tables, visualizations, and written reports.
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10.54 score 23 stars 53 dependents 168 scripts 44k downloadscardx - Extra Analysis Results Data Utilities
Create extra Analysis Results Data (ARD) summary objects. The package supplements the simple ARD functions from the 'cards' package, exporting functions to put statistical results in the ARD format. These objects are used and re-used to construct summary tables, visualizations, and written reports.
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10.54 score 23 stars 53 dependents 168 scripts 44k downloads
xportr - Utilities to Output CDISC SDTM/ADaM XPT Files
Tools to build CDISC compliant data sets and check for CDISC compliance.
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clinical-programmersxpt
10.52 score 54 stars 1 dependents 310 scripts 1.4k downloads
admiralonco - Oncology Extension Package for ADaM in 'R' Asset Library
Programming oncology specific Clinical Data Interchange Standards Consortium (CDISC) compliant Analysis Data Model (ADaM) datasets in 'R'. ADaM datasets are a mandatory part of any New Drug or Biologics License Application submitted to the United States Food and Drug Administration (FDA). Analysis derivations are implemented in accordance with the "Analysis Data Model Implementation Guide" (CDISC Analysis Data Model Team (2021), <https://www.cdisc.org/standards/foundational/adam>). The package is an extension package of the 'admiral' package.
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10.26 score 46 stars 1 dependents 77 scripts 843 downloadsteal.modules.general - General Modules for 'teal' Applications
Prebuilt 'shiny' modules containing tools for viewing data, visualizing data, understanding missing and outlier values within your data and performing simple data analysis. This extends 'teal' framework that supports reproducible research and analysis.
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general-purposemodulesnestshiny
10.19 score 17 stars 175 scripts 577 downloads
formatters - ASCII Formatting for Values and Tables
We provide a framework for rendering complex tables to ASCII, and a set of formatters for transforming values or sets of values into ASCII-ready display strings.
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formatmatrixtable
9.89 score 20 stars 23 dependents 86 scripts 7.1k downloads
metacore - A Centralized Metadata Object Focus on Clinical Trial Data Programming Workflows
Create an immutable container holding metadata for the purpose of better enabling programming activities and functionality of other packages within the clinical programming workflow.
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9.83 score 50 stars 1 dependents 311 scripts 1.6k downloads
rlistings - Clinical Trial Style Data Readout Listings
Listings are often part of the submission of clinical trial data in regulatory settings. We provide a framework for the specific formatting features often used when displaying large datasets in that context.
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9.71 score 29 stars 12 dependents 117 scripts 1.2k downloads
Tplyr - A Traceability Focused Grammar of Clinical Data Summary
A traceability focused tool created to simplify the data manipulation necessary to create clinical summaries.
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pharmatables
9.56 score 109 stars 161 scripts 842 downloadsteal.data - Data Model for 'teal' Applications
Provides a 'teal_data' class as a unified data model for 'teal' applications focusing on reproducibility and relational data.
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data-modelnest
9.53 score 11 stars 10 dependents 68 scripts 1.1k downloadsteal.reporter - Reporting Tools for 'shiny' Modules
Prebuilt 'shiny' modules containing tools for the generation of 'rmarkdown' reports, supporting reproducible research and analysis.
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nestreportingshiny
9.47 score 9 stars 7 dependents 28 scripts 867 downloads
pharmaversesdtm - SDTM Test Data for the 'Pharmaverse' Family of Packages
A set of Study Data Tabulation Model (SDTM) datasets from the Clinical Data Interchange Standards Consortium (CDISC) pilot project used for testing and developing Analysis Data Model (ADaM) datasets inside the pharmaverse family of packages. SDTM dataset specifications are described in the CDISC SDTM implementation guide, accessible by creating a free account on <https://www.cdisc.org/>.
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9.44 score 40 stars 1 dependents 477 scripts 1.6k downloadsteal.widgets - 'shiny' Widgets for 'teal' Applications
Collection of 'shiny' widgets to support 'teal' applications. Enables the manipulation of application layout and plot or table settings.
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nestshinywidgets
9.37 score 6 stars 9 dependents 42 scripts 1.1k downloads
tidytlg - Create TLGs using the 'tidyverse'
Generate tables, listings, and graphs (TLG) using 'tidyverse'. Tables can be created functionally, using a standard TLG process, or by specifying table and column metadata to create generic analysis summaries. The 'envsetup' package can also be leveraged to create environments for table creation.
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9.23 score 40 stars 2 dependents 65 scripts 726 downloadsteal.slice - Filter Module for 'teal' Applications
Data filtering module for 'teal' applications. Allows for interactive filtering of data stored in 'data.frame' and 'MultiAssayExperiment' objects. Also displays filtered and unfiltered observation counts.
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modulesnestslice
9.21 score 13 stars 7 dependents 8 scripts 1.1k downloadsteal.code - Code Storage and Execution Class for 'teal' Applications
Introduction of 'qenv' S4 class, that facilitates code execution and reproducibility in 'teal' applications.
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nestshiny
9.11 score 12 stars 11 dependents 16 scripts 1.1k downloads
rbmi - Reference Based Multiple Imputation
Implements standard and reference based multiple imputation methods for continuous longitudinal endpoints (Gower-Page et al. (2022) <doi:10.21105/joss.04251>). In particular, this package supports deterministic conditional mean imputation and jackknifing as described in Wolbers et al. (2022) <doi:10.1002/pst.2234>, Bayesian multiple imputation as described in Carpenter et al. (2013) <doi:10.1080/10543406.2013.834911>, and bootstrapped maximum likelihood imputation as described in von Hippel and Bartlett (2021) <doi:10.1214/20-STS793>.
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9.00 score 21 stars 4 dependents 131 scripts 659 downloads
pharmaverseadam - ADaM Test Data for the 'Pharmaverse' Family of Packages
A set of Analysis Data Model (ADaM) datasets constructed using the Study Data Tabulation Model (SDTM) datasets contained in the 'pharmaversesdtm' package and the template scripts from the 'admiral' family of packages. ADaM dataset specifications are described in the CDISC ADaM implementation guide, accessible by creating a free account on <https://www.cdisc.org/>.
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8.92 score 37 stars 2 dependents 295 scripts 1.2k downloads
tfrmt - Applies Display Metadata to Analysis Results Datasets
Creates a framework to store and apply display metadata to Analysis Results Datasets (ARDs). The use of 'tfrmt' allows users to define table format and styling without the data, and later apply the format to the data.
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8.86 score 92 stars 1 dependents 139 scripts 816 downloads
logrx - A Logging Utility Focus on Clinical Trial Programming Workflows
A utility to facilitate the logging and review of R programs in clinical trial programming workflows.
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8.73 score 48 stars 1 dependents 33 scripts 900 downloads
nestcolor - Colors for NEST Graphs
Clinical reporting figures require to use consistent colors and configurations. As a part of the Roche open-source clinical reporting project, namely the NEST project, the 'nestcolor' package specifies the color code and default theme with specifying 'ggplot2' theme parameters. Users can easily customize color and theme settings before using the reset of NEST packages to ensure consistent settings in both static and interactive output at the downstream.
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8.40 score 5 stars 12 dependents 230 scripts 998 downloadsrandom.cdisc.data - Create Random ADaM Datasets
A set of functions to create random Analysis Data Model (ADaM) datasets and cached dataset. ADaM dataset specifications are described by the Clinical Data Interchange Standards Consortium (CDISC) Analysis Data Model Team.
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cdiscdataset
8.27 score 45 stars 1 dependents 73 scripts 472 downloads
teal.transform - Functions for Extracting and Merging Data in the 'teal' Framework
A standardized user interface for column selection, that facilitates dataset merging in 'teal' framework.
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mergemodulesnesttransform
8.24 score 2 stars 5 dependents 24 scripts 702 downloads
risk.assessr - Assessing Package Risk Metrics
A reliable and validated tool that captures detailed risk metrics such as R 'CMD' check, test coverage, traceability matrix, documentation, dependencies, reverse dependencies, suggested dependency analysis, repository data, and enhanced reporting for R packages that are local or stored on remote repositories such as GitHub, CRAN, and Bioconductor.
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8.07 score 44 stars 44 scripts 448 downloads
chevron - Standard TLGs for Clinical Trials Reporting
Provide standard tables, listings, and graphs (TLGs) libraries used in clinical trials. This package implements a structure to reformat the data with 'dunlin', create reporting tables using 'rtables' and 'tern' with standardized input arguments to enable quick generation of standard outputs. In addition, it also provides comprehensive data checks and script generation functionality.
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clinical-trialsgraphslistingsnestreportingtables
7.86 score 20 stars 14 scripts 1.1k downloads
rtables.officer - Exporting Tools for 'rtables'
Designed to create and display complex tables with R, the 'rtables' R package allows cells in an 'rtables' object to contain any high-dimensional data structure, which can then be displayed with cell-specific formatting instructions. Additionally, the 'rtables.officer' package supports export formats related to the Microsoft Office software suite, including Microsoft Word ('docx') and Microsoft PowerPoint ('pptx').
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pharmaceuticalstables
7.78 score 5 stars 9 dependents 10 scripts 904 downloads
envsetup - Support the Setup of the R Environment for Clinical Trial Programming Workflows
The purpose of this package is to support the setup the R environment. The two main features are 'autos', to automatically source files and/or directories into your environment, and 'paths' to consistently set path objects across projects for input and output. Both are implemented using a configuration file to allow easy, custom configurations that can be used for multiple or all projects.
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7.55 score 12 stars 295 scripts 278 downloadsaNCA - (Pre-)Clinical NCA in a Dynamic Shiny App
An interactive 'shiny' application for performing non-compartmental analysis (NCA) on pre-clinical and clinical pharmacokinetic data. The package builds on 'PKNCA' for core estimators and provides interactive visualizations, CDISC outputs ('ADNCA', 'PP', 'ADPP'), configurable TLGs (tables, listings, and graphs) and draft slide decks. Typical use cases include exploratory analysis, validation, reporting or teaching/demonstration of NCA methods. Methods and core estimators are described in Denney, Duvvuri, and Buckeridge (2015) "Simple, Automatic Noncompartmental Analysis: The PKNCA R Package" <doi:10.1007/s10928-015-9432-2>.
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ncaopen-sourcepharmacokinetics
7.45 score 44 stars 11 scripts 486 downloadsmetatools - Enable the Use of 'metacore' to Help Create and Check Dataset
Uses the metadata information stored in 'metacore' objects to check and build metadata associated columns.
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7.43 score 24 stars 228 scripts 1.4k downloadstest.assessr - Assessing Package Test Reliability and Quality
A reliable and validated tool that calculates unit test coverage for R packages with standard testing frameworks and non-standard testing frameworks.
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7.41 score 20 stars 1 dependents 36 scripts 314 downloads
gridify - Enrich Figures and Tables with Custom Headers and Footers and More
A simple and flexible tool designed to create enriched figures and tables by providing a way to add text around them through predefined or custom layouts. Any input which is convertible to 'grob' is supported, like 'ggplot', 'gt' or 'flextable'. Based on R 'grid' graphics, for more details see Paul Murrell (2018) <doi:10.1201/9780429422768>.
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7.39 score 18 stars 1 dependents 20 scripts 1.1k downloads
datacutr - SDTM Datacut
Supports the process of applying a cut to Standard Data Tabulation Model (SDTM), as part of the analysis of specific points in time of the data, normally as part of investigation into clinical trials. The functions support different approaches of cutting to the different domains of SDTM normally observed.
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7.39 score 17 stars 17 scripts 376 downloads
hermes - Preprocessing, analyzing, and reporting of RNA-seq data
Provides classes and functions for quality control, filtering, normalization and differential expression analysis of pre-processed `RNA-seq` data. Data can be imported from `SummarizedExperiment` as well as `matrix` objects and can be annotated from `BioMart`. Filtering for genes without too low expression or containing required annotations, as well as filtering for samples with sufficient correlation to other samples or total number of reads is supported. The standard normalization methods including cpm, rpkm and tpm can be used, and 'DESeq2` as well as voom differential expression analyses are available.
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rnaseqdifferentialexpressionnormalizationpreprocessingqualitycontrolrna-seqstatistical-engineering
7.33 score 12 stars 1 dependents 46 scripts
pharmaRTF - Enhanced RTF Wrapper for Use with Existing Table Packages
Enhanced RTF wrapper written in R for use with existing R tables packages such as 'Huxtable' or 'GT'. This package fills a gap where tables in certain packages can be written out to RTF, but cannot add certain metadata or features to the document that are required/expected in a report for a regulatory submission, such as multiple levels of titles and footnotes, making the document landscape, and controlling properties such as margins.
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7.28 score 34 stars 139 scripts 599 downloadsteal.logger - Logging Setup for the 'teal' Family of Packages
Utilizing the 'logger' framework to record events within a package, specific to 'teal' family of packages. Supports logging namespaces, hierarchical logging, various log destinations, vectorization, and more.
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loggingnestutilities
7.18 score 7 stars 9 dependents 6 scripts 803 downloads
tern.mmrm - Tables and Graphs for Mixed Models for Repeated Measures (MMRM)
Mixed models for repeated measures (MMRM) are a popular choice for analyzing longitudinal continuous outcomes in randomized clinical trials and beyond; see for example Cnaan, Laird and Slasor (1997) <doi:10.1002/(SICI)1097-0258(19971030)16:20%3C2349::AID-SIM667%3E3.0.CO;2-E>. This package provides an interface for fitting MMRM within the 'tern' <https://cran.r-project.org/package=tern> framework by Zhu et al. (2023) and tabulate results easily using 'rtables' <https://cran.r-project.org/package=rtables> by Becker et al. (2023). It builds on 'mmrm' <https://cran.r-project.org/package=mmrm> by Sabanés Bové et al. (2023) for the actual MMRM computations.
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graphslistingsstatistical-engineeringtables
7.15 score 7 stars 2 dependents 9 scripts 659 downloads
sdtmchecks - Data Quality Checks for Study Data Tabulation Model (SDTM) Datasets
A series of checks to identify common issues in Study Data Tabulation Model (SDTM) datasets. These checks are intended to be generalizable, actionable, and meaningful for analysis.
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7.03 score 31 stars 19 scripts 319 downloads
simIDM - Simulating Oncology Trials using an Illness-Death Model
Based on the illness-death model a large number of clinical trials with oncology endpoints progression-free survival (PFS) and overall survival (OS) can be simulated, see Meller, Beyersmann and Rufibach (2019) <doi:10.1002/sim.8295>. The simulation set-up allows for random and event-driven censoring, an arbitrary number of treatment arms, staggered study entry and drop-out. Exponentially, Weibull and piecewise exponentially distributed survival times can be generated. The correlation between PFS and OS can be calculated.
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multistate-modelssimulation-engine
6.53 score 14 stars 15 scripts 331 downloadscovtracer - Contextualizing Tests
Dissects a package environment or 'covr' coverage object in order to cross reference tested code with the lines that are evaluated, as well as linking those evaluated lines to the documentation that they are described within. Connecting these three pieces of information provides a mechanism of linking tests to documented behaviors.
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6.32 score 23 stars 10 scripts 479 downloadsdunlin - Preprocessing Tools for Clinical Trial Data
A collection of functions to preprocess data and organize them in a format amenable to use by chevron.
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6.29 score 5 stars 1 dependents 521 downloads
visR - Clinical Graphs and Tables Adhering to Graphical Principles
To enable fit-for-purpose, reusable clinical and medical research focused visualizations and tables with sensible defaults and based on graphical principles as described in: "Vandemeulebroecke et al. (2018)" <doi:10.1002/pst.1912>, "Vandemeulebroecke et al. (2019)" <doi:10.1002/psp4.12455>, and "Morris et al. (2019)" <doi:10.1136/bmjopen-2019-030215>.
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6.26 score 188 stars 101 scripts 148 downloadsteal.modules.hermes - RNA-Seq Analysis Modules to Add to a Teal Application
RNA-seq analysis teal modules based on the `hermes` package.
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modulesrna-seq-analysisshiny
6.17 score 7 stars 33 scripts
r.pkg.template - R Package Template
R package template with GitHub Actions workflows included.
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gitgithub-actionstemplate
5.49 score 43 stars
simaerep - Detect Clinical Trial Sites Over- or Under-Reporting Clinical Events
Monitoring reporting rates of subject-level clinical events (e.g. adverse events, protocol deviations) reported by clinical trial sites is an important aspect of risk-based quality monitoring strategy. Sites that are under-reporting or over-reporting events can be detected using bootstrap simulations during which patients are redistributed between sites. Site-specific distributions of event reporting rates are generated that are used to assign probabilities to the observed reporting rates. (Koneswarakantha 2024 <doi:10.1007/s43441-024-00631-8>).
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ae-reportingclinical-trials
5.39 score 27 stars 20 scripts 301 downloadsgoshawk - Longitudinal Visualization Functions
Functions that plot and summarize biomarkers/labs of interest. Visualizations include: box plot, correlation plot, density distribution, line plot and spaghetti plot. Data are expected in ADaM structure. Requires analysis subject level (ADSL) and analysis laboratory (ADLB) data sets. Beyond core variables, Limit of Quantification flag variable (LOQFL) is expected with levels 'Y', 'N' or NA.
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plotsummarization
5.35 score 5 stars 1 dependentstern.rbmi - Create Interface for 'RBMI' and 'tern'
'RBMI' implements standard and reference based multiple imputation methods for continuous longitudinal endpoints (Gower-Page et al. (2022) <doi:10.21105/joss.04251>). This package provides an interface for 'RBMI' uses the 'tern' <https://cran.r-project.org/package=tern> framework by Zhu et al. (2023) and tabulate results easily using 'rtables' <https://cran.r-project.org/package=rtables> by Becker et al. (2023).
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graphslistingstables
5.05 score 4 stars 5 scripts 11 downloads
pharmaverseraw - Raw Data for 'pharmaversesdtm' Package
A set of raw datasets used to create SDTM domains in 'pharmaversesdtm' package.
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4.99 score 8 stars 61 scripts 306 downloadsadmiral.test - Test Data for the 'admiral' Package
A set of Study Data Tabulation Model (SDTM) datasets from the Clinical Data Interchange Standards Consortium (CDISC) pilot project used for testing and developing Analysis Data Model (ADaM) derivations inside the 'admiral' package.
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4.80 score 2 stars 374 scripts 241 downloadsosprey - R Package to Create TLGs
Community effort to collect TLG code and create a catalogue.
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cataloggraphslistingsnesttables
4.72 score 5 stars 1 dependents 1 scriptsscda - Package to Access Synthetic CDISC Archive Data
Access Synthetic CDISC Data from Archive Packages.
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cdiscnestsynthetic-data
4.65 score 13 stars 30 scriptsroxy.shinylive - A 'roxygen2' Extension for 'Shinylive'
An extension for 'roxygen2' to embed 'Shinylive' applications in the package documentation.
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documentationroxygen2shinyshinylivewebr
4.51 score 13 stars 296 downloadsflexsurvPlus - Provides Functions to Perform Survival Analysis for Economic models
A group of functions designed to perform survival analyses.
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cost-effectivenesscost-effectiveness-analysishealth-economic-evaluationhealth-economicshtasurvival-analysis
4.45 score 4 stars 8 scriptsscda.2022 - Synthetic CDISC Data Archive 2022
An archive of synthetic CDISC data for 2022.
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cdiscnestsynthetic-data
3.95 score 10 stars 4 scriptspharmaverse - Navigate 'Pharmaverse'
The 'pharmaverse' is a set of packages that compose multiple pathways through clinical data generation and reporting in the pharmaceutical industry. This package is designed to guide users to our work-spaces on 'GitHub', 'Slack' and 'LinkedIn' as well as our website and examples. Learn more about the 'pharmaverse' at <https://pharmaverse.org>.
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3.90 score 8 stars 7 scripts 317 downloadsMAIC - Package to Perform Matched-adjusted Indirect Comparisons
A group of functions designed to perform matched-adjusted indirect comparisons as per NICE TSD 18 and summarise the results for survival data (using hazard ratios) and binary data (using odds ratios.)
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evidence-synthesishealth-economic-evaluationhta
3.86 score 8 stars 45 scriptspsborrow - Bayesian Dynamic Borrowing with Propensity Score
A tool which aims to help evaluate the effect of external borrowing using an integrated approach described in Lewis et al., (2019) <doi:10.1080/19466315.2018.1497533> that combines propensity score and Bayesian dynamic borrowing methods.
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jagscpp
3.60 score 4 scripts 430 downloadsscda.2021 - Synthetic CDISC Data Archive 2021
An archive of synthetic CDISC data for 2021.
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cdiscnestsynthetic-data
3.53 score 4 starsmtdesign - Mander and Thompson Designs
Implements Mander & Thompson's (2010) <doi:10.1016/j.cct.2010.07.008> methods for two-stage designs optimal under the alternative hypothesis for phase II [cancer] trials. Also provides an implementation of Simon's (1989) <doi:10.1016/0197-2456(89)90015-9> original methodology and allows exploration of the operating characteristics of sub-optimal designs.
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cpp
3.48 score 3 stars 4 scripts 407 downloadsgemtcPlus - Provides a suite of extension functions for NMA using the `gemtc` package
Functions for generating outputs: tables and plots for NMA reports.
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evidence-synthesishealth-economic-evaluationhealth-economicshtajagscpp
3.10 score 7 stars 12 scriptsCTP - Closed Testing Procedure (CTP)
This is a package for constructing hypothesis trees for treatment comparisons based on the closure principle and analysing the corresponding Closed Testing Procedures (CTP) using adjusted p-values. For reference, see Marcus, R., Peritz, E, and Gabriel, K.R. (1976) <doi:10.2307/2335748> and Bauer, P (1991) <doi:10.1002/sim.4780100609>.
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3.00 score 1 stars 4 scripts 38 downloadslogrxaddin - Addin for the 'logrx' Package
This is an extension package to 'logrx', which is a log creation program focused on Clinical Reporting within the Pharma Industry. This package enables a simple 'shiny-based' Add-in that provides a point and click interface to produce a log for a single program.
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2.70 score 1 stars 197 downloadsnesttemplate - `pkgdown` Template for NEST Packages
This is a private template for use by core NEST packages. Please don't use for your own code.
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nestpkgdown-templatetemplate
2.70 score 2 stars
facetsr - facets R wrapper
The goal of facetsr is to create an R wrapper for facets. So use facets to explore your dataset.
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2.30 score 4 stars 4 scriptsdescem - Discrete Event Simulation for Cost-Effectiveness Modelling
A package designed to perform discrete event simulation for cost-effectiveness modelling.
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health-economic-evaluationhealth-economicshtasurvival-analysis
2.18 score 3 stars 6 scriptsrpsftmPlus - Extensions To Rpsftm Package
A collection of extenstions to the rpsftm package to enable descriptive analysis of trials affected by treatment switching and enable additional analysis of rpsft models.
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health-economic-evaluationhealth-economicshtasurvival-analysis
2.18 score 3 stars 1 scripts