Package: admiralophtha 1.5.0.9005

Edoardo Mancini

admiralophtha: ADaM in R Asset Library - Ophthalmology

Aids the programming of Clinical Data Standards Interchange Consortium (CDISC) compliant Ophthalmology Analysis Data Model (ADaM) datasets in R. ADaM datasets are a mandatory part of any New Drug or Biologics License Application submitted to the United States Food and Drug Administration (FDA). Analysis derivations are implemented in accordance with the "Analysis Data Model Implementation Guide" (CDISC Analysis Data Model Team, 2021, <https://www.cdisc.org/standards/foundational/adam/adamig-v1-3-release-package>).

Authors:Edoardo Mancini [aut, cre], Yuki Matsunaga [aut], Pavankumar Bhagat [aut], F. Hoffmann-La Roche AG [cph, fnd], Novartis AG [cph, fnd]

admiralophtha_1.5.0.9005.tar.gz
admiralophtha_1.5.0.9005.zip(r-4.7-any)admiralophtha_1.5.0.9005.zip(r-4.6-any)admiralophtha_1.5.0.9005.zip(r-4.5-any)
admiralophtha_1.5.0.9005.tgz(r-4.6-any)admiralophtha_1.5.0.9005.tgz(r-4.5-any)
admiralophtha_1.5.0.9005.tar.gz(r-4.7-any)admiralophtha_1.5.0.9005.tar.gz(r-4.6-any)
admiralophtha_1.5.0.9005.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
admiralophtha/json (API)

# Install 'admiralophtha' in R:
install.packages('admiralophtha', repos = c('https://pharmaverse.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/pharmaverse/admiralophtha/issues

Pkgdown/docs site:https://pharmaverse.github.io

Datasets:

On CRAN:

Conda:

8.87 score 22 stars 1 packages 18 scripts 539 downloads 5 exports 44 dependencies

Last updated from:c83b55860e. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develOK149
source / vignettesOK234
linux-releaseOK177
macos-releaseOK112
macos-oldrelOK150
windows-develOK136
windows-releaseOK104
windows-oldrelOK104
wasm-releaseOK120

Exports:convert_etdrs_to_logmarconvert_logmar_to_etdrsderive_var_afeyederive_var_bcvacritxflderive_var_studyeye

Dependencies:admiraladmiraldevbrewcallrclicommonmarkcpp11descdplyrevaluatefsgenericsgluehighrhmsknitrlifecyclelubridatemagrittrotelpillarpkgbuildpkgconfigpkgloadprocessxpspurrrR6rdtoolsrlangroxygen2rprojrootstringistringrtibbletidyrtidyselecttimechangeutf8vctrswithrxfunxml2yaml

Creating ADBCVA
Introduction | Dataset Contents | Required Packages | Programming Workflow | Initial set up of ADBCVA | Deriving LogMAR Score Parameters | Further Derivations of Standard BDS Variables | Deriving Analysis Value Categories for Snellen Scores | Deriving Criterion Flags for BCVA Change | Additional Notes | Example Script
Rendered fromadbcva.Rmdusingknitr::rmarkdown

Last update: 2026-10-23
Started: 2023-03-13

Creating ADGA
Introduction | Dataset Contents | Acronyms | Required Packages | Programming Workflow | Initial set up of ADGA | Creating Square Root Transformed GA Area measured by FAF derived parameter | Assigning AVISIT/AVISITN | Deriving Worst Post-Baseline Assessment Flag | Further Derivations of Standard BDS Variables | Example Script
Rendered fromadga.Rmdusingknitr::rmarkdown

Last update: 2026-10-23
Started: 2026-10-23

Get Started
Introduction | What does {admiralophtha} offer? | Starting a Script | Support
Rendered fromadmiralophtha.Rmdusingknitr::rmarkdown

Last update: 2026-10-23
Started: 2023-03-13

Ophthalmology Standards
Introduction | Dataset Subdivision | Criterion Flags | Affected Eye Derivation | Differences between pre and post-dose IOP
Rendered fromstandards.Rmdusingknitr::rmarkdown

Last update: 2026-10-23
Started: 2023-03-13

Creating ADOE
Introduction | Dataset Contents | Required Packages | Programming Workflow | Initial set up of ADOE | Assigning PARAM/PARAMCD and AVISIT/AVISITN | Creating IOP pre to post-dose difference derived parameter | Further Derivations of Standard BDS Variables | Example Script
Rendered fromadoe.Rmdusingknitr::rmarkdown

Last update: 2026-06-11
Started: 2023-03-13

Creating ADVFQ
Introduction | Dataset Contents | Required Packages | Programming Workflow | Reading In Data and Setting Up Lookup Tables | Original Items (param_lookup_original) | Transformed Records (param_lookup_transformed) | Composite Records (param_lookup_composite) | Initial Set Up and Mapping the Raw Records | Deriving the Transformed Parameters | Deriving the Composite Parameters | Composite Scores by Category | Overall Composite Scores | Further Derivations of Standard BDS Variables | Example Script
Rendered fromadvfq.Rmdusingknitr::rmarkdown

Last update: 2026-06-11
Started: 2023-03-13