R packages by pharmaverse

Namrata Bhatia, Stefanie Bienert, Benoit Falquet, Haocheng Li, Jeff Luong, Lyndsee Midori Zhang, Alex Richardson, Simona Rossomanno, Tim Treis, Mark Yan, Naomi Chang, Chendi Liao, Carolyn Zhang, Joseph N. Paulson, Daniel Sabanés Bové

Rendered from hermes.Rmd in hermes 1.7.2.9003.

Get Started with {riskassessment}Updated 5 months ago

Aaron Clark

Rendered from riskassessment.Rmd in riskassessment 3.1.1.

Custom basic_table arguments moduleUpdated 5 months ago

Maciej Nasiński

Rendered from custom-basic-table-arguments.Rmd in teal.widgets 0.4.2.9022.

DeploymentUpdated 5 months ago

Aaron Clark

Rendered from Deployment.Rmd in riskassessment 3.1.1.

Creating ADRS with IMWG CriteriaUpdated 5 months ago

Stefan Bundfuss

Rendered from adrs_imwg.Rmd in admiralonco 1.1.0.

Creating a Basic ADRSUpdated 5 months ago

Stefan Bundfuss

Rendered from adrs_basic.Rmd in admiralonco 1.1.0.

Creating ADRS (Including Non-standard Endpoints)Updated 5 months ago

Stefan Bundfuss

Rendered from adrs.Rmd in admiralonco 1.1.0.

Creating ADRS with iRECIST endpointsUpdated 5 months ago

Stefan Bundfuss

Rendered from irecist.Rmd in admiralonco 1.1.0.

Creating ADTRUpdated 5 months ago

Stefan Bundfuss

Rendered from adtr.Rmd in admiralonco 1.1.0.

Creating ADTTEUpdated 5 months ago

Stefan Bundfuss

Rendered from adtte.Rmd in admiralonco 1.1.0.

Creating and Using New Anti-Cancer Start DateUpdated 5 months ago

Stefan Bundfuss

Rendered from nactdt.Rmd in admiralonco 1.1.0.

Get StartedUpdated 5 months ago

Stefan Bundfuss

Rendered from admiralonco.Rmd in admiralonco 1.1.0.

Creating ADBCVAUpdated 5 months ago

Edoardo Mancini

Rendered from adbcva.Rmd in admiralophtha 1.1.0.9006.

Creating ADOEUpdated 5 months ago

Edoardo Mancini

Rendered from adoe.Rmd in admiralophtha 1.1.0.9006.

Creating ADVFQUpdated 5 months ago

Edoardo Mancini

Rendered from advfq.Rmd in admiralophtha 1.1.0.9006.

Programming Concepts and ConventionsUpdated 5 months ago

Ben Straub

Rendered from concepts_conventions.Rmd in admiral 1.1.1.9025.

Get StartedUpdated 5 months ago

Edoardo Mancini

Rendered from admiralophtha.Rmd in admiralophtha 1.1.0.9006.

Introduction to goshawkUpdated 6 months ago

Nick Paszty

Rendered from goshawk.Rmd in goshawk 0.1.18.9007.

Visit and Period VariablesUpdated 6 months ago

Ben Straub

Rendered from visits_periods.Rmd in admiral 1.1.1.9025.

Column Metadata & How tidytlg Sets Up Your Data Using tlgsetupUpdated 7 months ago

Konrad Pagacz

Rendered from tlgsetup.Rmd in tidytlg 0.1.5.

Frequency AnalysisUpdated 7 months ago

Konrad Pagacz

Rendered from freq.Rmd in tidytlg 0.1.5.

Manipulating tbl data frameUpdated 7 months ago

Konrad Pagacz

Rendered from tbl_manipulation.Rmd in tidytlg 0.1.5.

Tips & Tricks: Including Symbols, Superscripts, Subscripts & Line BreaksUpdated 7 months ago

Konrad Pagacz

Rendered from symbols.Rmd in tidytlg 0.1.5.

Univariate Statistics AnalysisUpdated 7 months ago

Konrad Pagacz

Rendered from univar.Rmd in tidytlg 0.1.5.

Quick start: substitute for NSEUpdated 7 months ago

Francois Collin

Rendered from quickstart_substitute.Rmd in teal.modules.clinical 0.9.1.9031.

PaginationUpdated 8 months ago

Emily de la Rua

Rendered from pagination.Rmd in rlistings 0.2.9.9009.

Getting Started with teal.transformUpdated 8 months ago

NEST CoreDev

Rendered from teal-transform.Rmd in teal.transform 0.5.0.9016.

Details of Weighted Least Square Empirical CovarianceUpdated 8 months ago

Daniel Sabanes Bove

Rendered from empirical_wls.Rmd in mmrm 0.3.14.9001.

Getting StartedUpdated 8 months ago

Emily de la Rua and Gabriel Becker

Rendered from rlistings.Rmd in rlistings 0.2.9.9009.

Custom ggplot2 arguments moduleUpdated 8 months ago

Maciej Nasiński

Rendered from custom-ggplot2-arguments.Rmd in teal.widgets 0.4.2.9022.

Combining Data Extract with Data MergeUpdated 8 months ago

NEST CoreDev

Rendered from data-extract-merge.Rmd in teal.transform 0.5.0.9016.

Data ExtractUpdated 8 months ago

NEST CoreDev

Rendered from data-extract.Rmd in teal.transform 0.5.0.9016.

Data MergeUpdated 8 months ago

NEST CoreDev

Rendered from data-merge.Rmd in teal.transform 0.5.0.9016.

Getting startedUpdated 8 months ago

NEST CoreDev Team

Rendered from teal-logger.Rmd in teal.logger 0.3.0.9002.

Getting StartedUpdated 8 months ago

Dony Unardi

Rendered from Getting_Started.Rmd in teal.modules.hermes 0.1.6.9024.

Getting Started with tealUpdated 8 months ago

NEST CoreDev

Rendered from getting-started-with-teal.Rmd in teal 0.15.2.9086.

Standards in Different Regulatory AgenciesUpdated 9 months ago

Eli Miller

Rendered from agency_standards.Rmd in xportr 0.4.1.

Rebuilding Cached Random CDISC DataUpdated 9 months ago

Joe Zhu

Rendered from rebuild_cached_data.Rmd in random.cdisc.data 0.3.16.9001.

Example Data GenerationUpdated 9 months ago

Joe Zhu

Rendered from generate_tmc_test_data.Rmd in teal.modules.clinical 0.9.1.9031.

ReformattingUpdated 9 months ago

Liming Li

Rendered from Reformatting.Rmd in dunlin 0.1.8.9002.

Getting StartedUpdated 9 months ago

Eli Miller

Rendered from xportr.Rmd in xportr 0.4.1.

Count LayersUpdated 9 months ago

Mike Stackhouse

Rendered from count.Rmd in Tplyr 1.2.1.

Creating Custom Tplyr MetadataUpdated 9 months ago

Mike Stackhouse

Rendered from custom-metadata.Rmd in Tplyr 1.2.1.

Totals, Missings, and DenominatorsUpdated 9 months ago

Mike Stackhouse

Rendered from denom.Rmd in Tplyr 1.2.1.

Advanced Descriptive Statistic Layer FormattingUpdated 9 months ago

Mike Stackhouse

Rendered from desc_layer_formatting.Rmd in Tplyr 1.2.1.

Descriptive Statistic LayersUpdated 9 months ago

Mike Stackhouse

Rendered from desc.Rmd in Tplyr 1.2.1.

General String FormattingUpdated 9 months ago

Mike Stackhouse

Rendered from general_string_formatting.Rmd in Tplyr 1.2.1.

Layer TemplatesUpdated 9 months ago

Mike Stackhouse

Rendered from layer_templates.Rmd in Tplyr 1.2.1.

Tplyr MetadataUpdated 9 months ago

Mike Stackhouse

Rendered from metadata.Rmd in Tplyr 1.2.1.

Post-ProcessingUpdated 9 months ago

Mike Stackhouse

Rendered from post_processing.Rmd in Tplyr 1.2.1.

Shift LayersUpdated 9 months ago

Mike Stackhouse

Rendered from shift.Rmd in Tplyr 1.2.1.

Tplyr Table PropertiesUpdated 9 months ago

Mike Stackhouse

Rendered from table.Rmd in Tplyr 1.2.1.

Getting StartedUpdated 9 months ago

Mike Stackhouse

Rendered from Tplyr.Rmd in Tplyr 1.2.1.

Tplyr OptionsUpdated 9 months ago

Mike Stackhouse

Rendered from options.Rmd in Tplyr 1.2.1.

Filter PanelUpdated 10 months ago

NEST CoreDev

Rendered from filter-panel.Rmd in teal 0.15.2.9086.

Filter Panel for DevelopersUpdated 10 months ago

NEST CoreDev

Rendered from filter-panel-for-developers.Rmd in teal.slice 0.5.1.9016.

Introduction to teal.sliceUpdated 10 months ago

NEST CoreDev

Rendered from teal-slice.Rmd in teal.slice 0.5.1.9016.

teal.slice ClassesUpdated 10 months ago

NEST CoreDev

Rendered from teal-slice-classes.Rmd in teal.slice 0.5.1.9016.

rbmi: Inference with Conditional Mean ImputationUpdated 10 months ago

Craig Gower-Page

Rendered from CondMean_Inference.html.asis in rbmi 1.3.0.9000.

Introduction to the formatters packageUpdated 10 months ago

Gabriel Becker

Rendered from formatters.Rmd in formatters 0.5.9.9003.

Details of Hypothesis TestingUpdated 10 months ago

Daniel Sabanes Bove

Rendered from hypothesis_testing.Rmd in mmrm 0.3.14.9001.

Power and Type I Error CalculationsUpdated 10 months ago

Alexandra Erdmann, Holger Löwe

Rendered from trialplanning.Rmd in simIDM 0.1.0.9006.

Coefficients Covariance Matrix AdjustmentUpdated 10 months ago

Daniel Sabanes Bove

Rendered from coef_vcov.Rmd in mmrm 0.3.14.9001.

Model Fitting AlgorithmUpdated 10 months ago

Daniel Sabanes Bove

Rendered from algorithm.Rmd in mmrm 0.3.14.9001.

Package IntroductionUpdated 10 months ago

Daniel Sabanes Bove

Rendered from introduction.Rmd in mmrm 0.3.14.9001.

Package StructureUpdated 10 months ago

Daniel Sabanes Bove

Rendered from package_structure.Rmd in mmrm 0.3.14.9001.

Prediction and SimulationUpdated 10 months ago

Daniel Sabanes Bove

Rendered from predict.Rmd in mmrm 0.3.14.9001.

Frequently Asked Questions (FAQs)Updated 11 months ago

Will Harris

Rendered from faqs.Rmd in sdtmchecks 1.0.0.

Comparison with other softwareUpdated 11 months ago

Daniel Sabanes Bove

Rendered from mmrm_review_methods.Rmd in mmrm 0.3.14.9001.

Introduction to tern.geeUpdated 11 months ago

Joe Zhu

Rendered from tern-gee.Rmd in tern.gee 0.1.5.9004.

Correlation between PFS and OSUpdated 11 months ago

Holger Löwe

Rendered from correlation.Rmd in simIDM 0.1.0.9006.

Getting StartedUpdated 11 months ago

Alexandra Erdmann

Rendered from quickstart.Rmd in simIDM 0.1.0.9006.

Piecewise Constant Hazards CalculationsUpdated 11 months ago

Daniel Sabanés Bové

Rendered from pwc_survival.Rmd in simIDM 0.1.0.9006.

{rtables} Advanced UsageUpdated 12 months ago

Gabriel Becker

Rendered from advanced_usage.Rmd in rtables 0.6.10.9004.

Queries Dataset DocumentationUpdated 12 months ago

Ben Straub

Rendered from queries_dataset.Rmd in admiral 1.1.1.9025.

Introduction to ChevronUpdated 12 months ago

Liming Li

Rendered from chevron.Rmd in chevron 0.2.8.9002.

Script_GeneratorUpdated 12 months ago

Liming Li

Rendered from script_generator.Rmd in chevron 0.2.8.9002.

Generic DerivationsUpdated 12 months ago

Ben Straub

Rendered from generic.Rmd in admiral 1.1.1.9025.

Ophthalmology StandardsUpdated 1 years ago

Edoardo Mancini

Rendered from standards.Rmd in admiralophtha 1.1.0.9006.

Between-WithinUpdated 1 years ago

Daniel Sabanes Bove

Rendered from between_within.Rmd in mmrm 0.3.14.9001.

Covariance StructuresUpdated 1 years ago

Daniel Sabanes Bove

Rendered from covariance.Rmd in mmrm 0.3.14.9001.

Kenward-RogerUpdated 1 years ago

Daniel Sabanes Bove

Rendered from kenward.Rmd in mmrm 0.3.14.9001.

Mixed Models for Repeated MeasuresUpdated 1 years ago

Daniel Sabanes Bove

Rendered from methodological_introduction.Rmd in mmrm 0.3.14.9001.

SatterthwaiteUpdated 1 years ago

Daniel Sabanes Bove

Rendered from satterthwaite.Rmd in mmrm 0.3.14.9001.

Comparing Against Baselines or ControlUpdated 1 years ago

Gabriel Becker and Adrian Waddell

Rendered from baseline.Rmd in rtables 0.6.10.9004.

Generating a LogUpdated 1 years ago

Nathan Kosiba

Rendered from execution.Rmd in logrx 0.3.1.

Logging Unapproved Package and Function UseUpdated 1 years ago

Nathan Kosiba

Rendered from approved.Rmd in logrx 0.3.1.

logrx OptionsUpdated 1 years ago

Nathan Kosiba

Rendered from options.Rmd in logrx 0.3.1.

logrxpackageUpdated 1 years ago

Nathan Kosiba

Rendered from logrx.Rmd in logrx 0.3.1.

Date and Time ImputationUpdated 1 years ago

Ben Straub

Rendered from imputation.Rmd in admiral 1.1.1.9025.

ReproducibilityUpdated 1 years ago

NEST coreDev

Rendered from teal-code.Rmd in teal.code 0.5.0.9018.

Writing a New CheckUpdated 1 years ago

Will Harris

Rendered from write_a_check.Rmd in sdtmchecks 1.0.0.

Introduction to sdtmchecksUpdated 1 years ago

Will Harris

Rendered from sdtmchecks.Rmd in sdtmchecks 1.0.0.

User Roles and PrivilegesUpdated 1 years ago

Aaron Clark

Rendered from User_Roles_and_Privileges.Rmd in riskassessment 3.1.1.

Format Precedence and NA HandlingUpdated 1 years ago

Wojciech Wójciak and Gabriel Becker

Rendered from format_precedence.Rmd in rtables 0.6.10.9004.

Missing Values in TernUpdated 1 years ago

Joe Zhu

Rendered from missing_values.Rmd in tern 0.9.6.9015.

Data ExpectationsUpdated 1 years ago

NEST CoreDev Team

Rendered from data-expectations.Rmd in teal.goshawk 0.2.0.9018.

User GuideUpdated 1 years ago

NEST CoreDev Team

Rendered from user-guide.Rmd in teal.goshawk 0.2.0.9018.

Administrative Tools and Options V0.1.1Updated 1 years ago

Aaron Clark

Rendered from Administrative_Tools_and_Options_V0.1.1.Rmd in riskassessment 3.1.1.

Credential ManagerUpdated 1 years ago

Aaron Clark

Rendered from Credential_Manager.Rmd in riskassessment 3.1.1.

Deployment V0.1.1Updated 1 years ago

Aaron Clark

Rendered from Deployment_V0.1.1.Rmd in riskassessment 3.1.1.

Search Data Check FunctionsUpdated 1 years ago

Will Harris

Rendered from search_checks.Rmd in sdtmchecks 1.0.0.

Excel example 1 - extrapolation calculationsUpdated 2 years ago

Roche

Rendered from Excel_example_ex1.Rmd in flexsurvPlus 1.06.

Excel example 2 - STEM compatibilityUpdated 2 years ago

Roche

Rendered from Excel_example_ex2.Rmd in flexsurvPlus 1.06.

Excel example 3 - correlated endpoints in PSAUpdated 2 years ago

Roche

Rendered from Excel_example_ex3.Rmd in flexsurvPlus 1.06.

Contribution to {datacutr}Updated 2 years ago

Tim Barnett

Rendered from contribution_model.Rmd in datacutr 0.2.0.

Constructing rtables ManuallyUpdated 2 years ago

Adrian Waddell

Rendered from manual_table_construction.Rmd in rtables 0.6.10.9004.

Developer onboarding - using renvUpdated 2 years ago

Aaron Clark

Rendered from dev_renv.Rmd in riskassessment 3.1.1.

Using SQLite Command LineUpdated 2 years ago

Aaron Clark

Rendered from dev_Using_SQLite_Command_Line.Rmd in riskassessment 3.1.1.

Formatting FunctionsUpdated 2 years ago

Joe Zhu

Rendered from tern_formats.Rmd in tern 0.9.6.9015.

Building Specification ReadersUpdated 2 years ago

Christina Fillmore

Rendered from Building_Specification_Readers.Rmd in metacore 0.1.3.

ExampleUpdated 2 years ago

Christina Fillmore

Rendered from Example.Rmd in metacore 0.1.3.

ThemesUpdated 2 years ago

Daniel D. Sjoberg

Rendered from themes.Rmd in ggsurvfit 1.1.0.9001.

Create Your ConfigUpdated 2 years ago

Nicholas Masel

Rendered from config.Rmd in envsetup 0.2.0.

Get Started with {tidyCDISC}Updated 2 years ago

Aaron Clark

Rendered from getting_started.Rmd in tidyCDISC 0.2.1.

Getting Started with nestcolorUpdated 2 years ago

Joe Zhu

Rendered from nestcolor.Rmd in nestcolor 0.1.2.9017.

Creating consort flow diagram with visRUpdated 2 years ago

Mark Baillie

Rendered from Consort_flow_diagram.Rmd in visR 0.4.1.

Styling survival plotsUpdated 2 years ago

Mark Baillie

Rendered from Styling_KM_plots.Rmd in visR 0.4.1.

Survival Analysis with visRUpdated 2 years ago

Mark Baillie

Rendered from Time_to_event_analysis.Rmd in visR 0.4.1.

Survival Analysis with visR using CDISC ADaM Time-To-Event Analysis Dataset (ADTTE)Updated 2 years ago

Mark Baillie

Rendered from CDISC_ADaM.Rmd in visR 0.4.1.

Analysing data with psborrowUpdated 3 years ago

Isaac Gravestock

Rendered from analysis.html.asis in psborrow 0.2.1.

User Guide: Dynamic Borrowing with psborrowUpdated 3 years ago

Isaac Gravestock

Rendered from user_guide.html.asis in psborrow 0.2.1.

STEM compatibilityUpdated 3 years ago

Roche

Rendered from STEM_compatibility.Rmd in flexsurvPlus 1.06.

Fitting parametric survival models in RUpdated 3 years ago

Roche

Rendered from Fitting_models_in_R.Rmd in flexsurvPlus 1.06.

Roche

Rendered from Bootstrap_models_in_R.Rmd in flexsurvPlus 1.06.

Parametric survival analysis using the flexsurvPlus package: understanding the theoryUpdated 3 years ago

Roche

Rendered from Model_theory.Rmd in flexsurvPlus 1.06.

rbmi: Advanced FunctionalityUpdated 3 years ago

Craig Gower-Page

Rendered from advanced.html.asis in rbmi 1.3.0.9000.

rbmi: QuickstartUpdated 3 years ago

Craig Gower-Page

Rendered from quickstart.html.asis in rbmi 1.3.0.9000.

rbmi: Statistical SpecificationsUpdated 3 years ago

Craig Gower-Page

Rendered from stat_specs.html.asis in rbmi 1.3.0.9000.

An Introduction to the r2rtf PackageUpdated 3 years ago

Benjamin Wang

Rendered from r2rtf-cran.Rmd in r2rtf 1.1.2.

Validating External Resources with {valtools}Updated 3 years ago

Ellis Hughes

Rendered from validating-external-resources.Rmd in valtools 0.4.1.

Introduction to RespectablesUpdated 3 years ago

Adrian Waddell

Rendered from introduction.Rmd in respectables 0.0.4.9000.

Specifying, Simulating and Synthesizing Relational Data in RUpdated 3 years ago

Gabriel Becker

Rendered from creating_synth_relational_data.Rmd in respectables 0.0.4.9000.

Starting New Validation Package using {valtools}Updated 4 years ago

Ellis Hughes

Rendered from starting-validated-package.Rmd in valtools 0.4.1.

Sourcing Titles and Footnotes From External FilesUpdated 4 years ago

Mike Stackhouse

Rendered from tf_from_file.Rmd in pharmaRTF 0.1.4.

Advanced Usage of pharmaRTFUpdated 4 years ago

Mike Stackhouse

Rendered from advanced_usage.Rmd in pharmaRTF 0.1.4.

Huxtable TipsUpdated 4 years ago

Mike Stackhouse

Rendered from huxtable_tips.Rmd in pharmaRTF 0.1.4.

pharmaRTFUpdated 4 years ago

Mike Stackhouse

Rendered from pharmaRTF.Rmd in pharmaRTF 0.1.4.