Package: metacore 0.1.3

Christina Fillmore

metacore: A Centralized Metadata Object Focus on Clinical Trial Data Programming Workflows

Create an immutable container holding metadata for the purpose of better enabling programming activities and functionality of other packages within the clinical programming workflow.

Authors:Christina Fillmore [aut, cre], Maya Gans [aut], Ashley Tarasiewicz [aut], Mike Stackhouse [aut], Tamara Senior [aut], GSK/Atorus JPT [cph, fnd]

metacore_0.1.3.tar.gz
metacore_0.1.3.zip(r-4.5)metacore_0.1.3.zip(r-4.4)metacore_0.1.3.zip(r-4.3)
metacore_0.1.3.tgz(r-4.4-any)metacore_0.1.3.tgz(r-4.3-any)
metacore_0.1.3.tar.gz(r-4.5-noble)metacore_0.1.3.tar.gz(r-4.4-noble)
metacore_0.1.3.tgz(r-4.4-emscripten)metacore_0.1.3.tgz(r-4.3-emscripten)
metacore.pdf |metacore.html✨
metacore/json (API)
NEWS

# Install 'metacore' in R:
install.packages('metacore', repos = c('https://pharmaverse.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/atorus-research/metacore/issues

On CRAN:

7.92 score 33 stars 1 packages 105 scripts 888 downloads 29 exports 29 dependencies

Last updated 6 months agofrom:4b251e0773. Checks:OK: 7. Indexed: no.

TargetResultDate
Doc / VignettesOKSep 29 2024
R-4.5-winOKSep 29 2024
R-4.5-linuxOKSep 29 2024
R-4.4-winOKSep 29 2024
R-4.4-macOKSep 29 2024
R-4.3-winOKSep 29 2024
R-4.3-macOKSep 29 2024

Exports:%>%check_inconsistent_formatscheck_inconsistent_labelscheck_inconsistent_typescreate_tbldefine_to_metacoreget_control_termget_keysis_metacoreload_metacoremetacoremetacore_exampleread_all_sheetssave_metacoreselect_datasetspec_to_metacorespec_typespec_type_to_codelistspec_type_to_derivationsspec_type_to_ds_specspec_type_to_ds_varsspec_type_to_value_specspec_type_to_var_specxml_to_codelistxml_to_derivationsxml_to_ds_specxml_to_ds_varsxml_to_value_specxml_to_var_spec

Dependencies:cellrangerclicpp11crayondplyrfansigenericsgluehmslifecyclemagrittrpillarpkgconfigprettyunitsprogresspurrrR6readxlrematchrlangstringistringrtibbletidyrtidyselectutf8vctrswithrxml2

Building Specification Readers

Rendered fromBuilding_Specification_Readers.Rmdusingknitr::rmarkdownon Sep 29 2024.

Last update: 2022-10-04
Started: 2021-04-07

Example

Rendered fromExample.Rmdusingknitr::rmarkdownon Sep 29 2024.

Last update: 2022-10-04
Started: 2021-02-08

Readme and manuals

Help Manual

Help pageTopics
Check all data frames include the correct types of columnscheck_columns
Optional checks to consistency of metadatacheck_inconsistent_formats check_inconsistent_labels check_inconsistent_types
Column Validation Functioncheck_structure
Check Words in Columncheck_words
Create tablecreate_tbl
Define XML to DataDef Objectdefine_to_metacore
Get Control Termget_control_term
Get Dataset Keysget_keys
Is metacore objectis_metacore
load metacore objectload_metacore
R6 Class wrapper to create your own metacore objectmetacore
Get path to metacore examplemetacore_example
Select method to subset by a single dataframeMetaCore_filter
Read in all Sheetsread_all_sheets
save metacore objectsave_metacore
Select metacore object to single datasetselect_dataset
Specification document to metacore objectspec_to_metacore
Check the type of spec documentspec_type
Spec to codelistspec_type_to_codelist
Spec to derivationspec_type_to_derivations
Spec to ds_specspec_type_to_ds_spec
Spec to ds_varsspec_type_to_ds_vars
Spec to value_specspec_type_to_value_spec
Spec to var_specspec_type_to_var_spec
XML to code listxml_to_codelist
XML to derivation tablexml_to_derivations
XML to Data Set Specxml_to_ds_spec
XML to Data Set Var tablexml_to_ds_vars
XML to value specxml_to_value_spec
XML to variable specxml_to_var_spec