Package: admiralonco 1.1.0
admiralonco: Oncology Extension Package for ADaM in 'R' Asset Library
Programming oncology specific Clinical Data Interchange Standards Consortium (CDISC) compliant Analysis Data Model (ADaM) datasets in 'R'. ADaM datasets are a mandatory part of any New Drug or Biologics License Application submitted to the United States Food and Drug Administration (FDA). Analysis derivations are implemented in accordance with the "Analysis Data Model Implementation Guide" (CDISC Analysis Data Model Team (2021), <https://www.cdisc.org/standards/foundational/adam>). The package is an extension package of the 'admiral' package.
Authors:
admiralonco_1.1.0.tar.gz
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admiralonco.pdf |admiralonco.html✨
admiralonco/json (API)
NEWS
# Install 'admiralonco' in R: |
install.packages('admiralonco', repos = c('https://pharmaverse.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/pharmaverse/admiralonco/issues
- admiral_adrs - Response Analysis Dataset
Last updated 5 months agofrom:e2ad84912b. Checks:OK: 7. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 16 2024 |
R-4.5-win | OK | Nov 16 2024 |
R-4.5-linux | OK | Nov 16 2024 |
R-4.4-win | OK | Nov 16 2024 |
R-4.4-mac | OK | Nov 16 2024 |
R-4.3-win | OK | Nov 16 2024 |
R-4.3-mac | OK | Nov 16 2024 |
Exports:aval_respbor_crbor_nebor_non_crpdbor_pdbor_prbor_sdcb_ycbor_crcbor_prcrsp_y_crcrsp_y_prdeath_eventderive_param_borderive_param_clinbenefitderive_param_confirmed_borderive_param_confirmed_respderive_param_responsefilter_pdget_crpr_datasetlasta_censorlastalive_censorno_data_missingno_data_npd_eventrand_censorrsp_ysignal_crprtrts_censor
Dependencies:admiraladmiraldevclicpp11dplyrfansigenericsgluehmslifecyclelubridatemagrittrpillarpkgconfigpurrrR6rlangstringistringrtibbletidyrtidyselecttimechangeutf8vctrswithr
Creating a Basic ADRS
Rendered fromadrs_basic.Rmd
usingknitr::rmarkdown
on Nov 16 2024.Last update: 2024-06-18
Started: 2023-09-14
Creating ADRS (Including Non-standard Endpoints)
Rendered fromadrs.Rmd
usingknitr::rmarkdown
on Nov 16 2024.Last update: 2024-06-18
Started: 2022-09-09
Creating ADRS with IMWG Criteria
Rendered fromadrs_imwg.Rmd
usingknitr::rmarkdown
on Nov 16 2024.Last update: 2024-06-18
Started: 2024-06-18
Creating ADRS with iRECIST endpoints
Rendered fromirecist.Rmd
usingknitr::rmarkdown
on Nov 16 2024.Last update: 2024-06-18
Started: 2023-12-13
Creating ADTR
Rendered fromadtr.Rmd
usingknitr::rmarkdown
on Nov 16 2024.Last update: 2024-06-18
Started: 2023-03-13
Creating ADTTE
Rendered fromadtte.Rmd
usingknitr::rmarkdown
on Nov 16 2024.Last update: 2024-06-18
Started: 2022-09-09
Creating and Using New Anti-Cancer Start Date
Rendered fromnactdt.Rmd
usingknitr::rmarkdown
on Nov 16 2024.Last update: 2024-06-18
Started: 2023-06-12
Get Started
Rendered fromadmiralonco.Rmd
usingknitr::rmarkdown
on Nov 16 2024.Last update: 2024-06-18
Started: 2022-09-09
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Response Analysis Dataset | admiral_adrs |
Map Character Response Values to Numeric Values | aval_resp |
Pre-Defined Time-to-Event Source Objects | death_event lastalive_censor lasta_censor pd_event rand_censor trts_censor |
Adds a Parameter for Best Overall Response (without confirmation) | derive_param_bor |
Adds a Parameter for Clinical Benefit | derive_param_clinbenefit |
Adds a Parameter for Confirmed Best Overall Response | derive_param_confirmed_bor |
Adds a Parameter for Confirmed Response | derive_param_confirmed_resp |
Adds a Parameter Indicating If a Subject Had a Response before Progressive Disease | derive_param_response |
Filter up to First PD (Progressive Disease) Date | filter_pd |
Get CR Records Followed by PR That Lead to a Prior Error | get_crpr_dataset |
Pre-Defined Response Event Objects | bor_cr bor_ne bor_non_crpd bor_pd bor_pr bor_sd cbor_cr cbor_pr cb_y crsp_y_cr crsp_y_pr no_data_missing no_data_n rsp_y |
Signal CR Records Followed by PR | signal_crpr |