{ "_id": "6a0f667bacfb0bcc41c5d47f", "Package": "metacore", "Title": "A Centralized Metadata Object Focus on Clinical Trial Data\nProgramming Workflows", "Version": "0.3.0", "Authors@R": "c(\nperson(\"Liam\", \"Hobby\", , \"liam.f.hobby@gsk.com\", role = c(\"aut\", \"cre\")),\nperson(\"Christina\", \"Fillmore\", , \"christina.e.fillmore@gsk.com\", role = \"aut\",\ncomment = c(ORCID = \"0000-0003-0595-2302\")),\nperson(\"Bill\", \"Denney\", role = \"aut\"),\nperson(\"Maya\", \"Gans\", , \"maya.gans@atorusresearch.com\", role = \"aut\",\ncomment = c(ORCID = \"0000-0002-5452-6089\")),\nperson(\"Ashley\", \"Tarasiewicz\", , \"ashley.tarasiewicz@atorusresearch.com\", role = \"aut\"),\nperson(\"Mike\", \"Stackhouse\", , \"mike.stackhouse@atorusresearch.com\", role = \"aut\",\ncomment = c(ORCID = \"0000-0001-6030-723X\")),\nperson(\"Tamara\", \"Senior\", , \"tamara.senior@roche.com\", role = \"aut\"),\nperson(\"GSK/Atorus JPT\", role = c(\"cph\", \"fnd\"))\n)", "Description": "Create an immutable container holding metadata for the\npurpose of better enabling programming activities and\nfunctionality of other packages within the clinical programming\nworkflow.", "License": "MIT + file LICENSE", "URL": "https://atorus-research.github.io/metacore/,\nhttps://github.com/atorus-research/metacore", "BugReports": "https://github.com/atorus-research/metacore/issues", "VignetteBuilder": "knitr", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE, r6 = FALSE)", "RoxygenNote": "7.3.3", "Config/pak/sysreqs": "libicu-dev libxml2-dev", "Repository": "https://pharmaverse.r-universe.dev", "Date/Publication": "2026-04-21 16:40:00 UTC", "RemoteUrl": "https://github.com/atorus-research/metacore", "RemoteRef": "HEAD", "RemoteSha": "062ec1d504a16a7d042075a6ffc32874cac42462", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-21 09:53:36 UTC", "User": "root" }, "Author": "Liam Hobby [aut, cre],\nChristina Fillmore [aut] (ORCID:\n),\nBill Denney [aut],\nMaya Gans [aut] (ORCID: ),\nAshley Tarasiewicz [aut],\nMike Stackhouse [aut] (ORCID: ),\nTamara Senior [aut],\nGSK/Atorus JPT [cph, fnd]", "Maintainer": "Liam Hobby ", "MD5sum": "14bc72e77f000b71e54ab1c1a976bd98", "_user": "pharmaverse", "_type": "src", "_file": "metacore_0.3.0.tar.gz", "_fileid": "198bd6a2bc5eb13a42ca2aca8b439588f6572686d198f17a586d7f0dfabd1f2f", "_filesize": 1739421, "_sha256": "198bd6a2bc5eb13a42ca2aca8b439588f6572686d198f17a586d7f0dfabd1f2f", "_created": "2026-05-21T09:53:36.000Z", "_published": "2026-05-21T20:09:31.844Z", "_distro": "noble", "_jobs": [ { "job": 77259108385, "time": 165, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7132712171" }, { "job": 77259108051, "time": 156, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7132709505" }, { "job": 77259108281, "time": 157, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7132709521" }, { "job": 77259108491, "time": 124, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7132698747" }, { "job": 77259107948, "time": 179, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7132654653" }, { "job": 77259107600, "time": 110, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7146071700" }, { "job": 77259108011, "time": 238, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7132736549" }, { "job": 77259108776, "time": 107, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7132692903" }, { "job": 77259108605, "time": 152, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7132708168" } ], "_buildurl": "https://github.com/r-universe/pharmaverse/actions/runs/26218688324", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/atorus-research/metacore", "_commit": { "id": "062ec1d504a16a7d042075a6ffc32874cac42462", "author": "Liam Hobby <102362579+LiamHobby@users.noreply.github.com>", "committer": "GitHub ", "message": "Merge pull request #151 from atorus-research/release-0.3.0\n\nRebuild readme from Rmd file", "time": 1776789600 }, "_maintainer": { "name": "Liam Hobby", "email": "liam.f.hobby@gsk.com" }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.1.0", "role": "Depends" }, { "package": "cli", "role": "Imports" }, { "package": "dplyr", "role": "Imports" }, { "package": "lifecycle", "role": "Imports" }, { "package": "magrittr", "role": "Imports" }, { "package": "purrr", "role": "Imports" }, { "package": "R6", "role": "Imports" }, { "package": "readxl", "role": "Imports" }, { "package": "rlang", "role": "Imports" }, { "package": "stringr", "role": "Imports" }, { "package": "tibble", "role": "Imports" }, { "package": "tidyr", "role": "Imports" }, { "package": "tidyselect", "role": "Imports" }, { "package": "xml2", "role": "Imports" }, { "package": "covr", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "role": "Suggests" } ], "_owner": "atorus-research", "_selfowned": false, "_usedby": 1, "_updates": [ { "week": "2025-28", "n": 9 }, { "week": "2025-29", "n": 2 }, { "week": "2025-51", "n": 1 }, { "week": "2026-04", "n": 3 }, { "week": "2026-05", "n": 1 }, { "week": "2026-07", "n": 1 }, { "week": "2026-08", "n": 1 }, { "week": "2026-09", "n": 1 }, { "week": "2026-17", "n": 4 } ], "_tags": [ { "name": "v0.2.0", "date": "2025-07-11" }, { "name": "0.2.1", "date": "2025-07-19" }, { "name": "0.3.0", "date": "2026-04-21" } ], "_stars": 47, "_contributors": [ { "user": "statasaurus", "count": 232, "uuid": 55274484 }, { "user": "mayagans", "count": 112, "uuid": 6053906 }, { "user": "liamhobby", "count": 31, "uuid": 102362579 }, { "user": "mstackhouse", "count": 31, "uuid": 31387567 }, { "user": "jeffreyad", "count": 9, "uuid": 112705781 }, { "user": "sadchla-codes", "count": 5, "uuid": 112789549 }, { "user": "elimillera", "count": 4, "uuid": 24767886 }, { "user": "seniort", "count": 3, "uuid": 51999139 }, { "user": "davisvaughan", "count": 1, "uuid": 19150088 }, { "user": "esimms999-gsk", "count": 1, "uuid": 85294667 }, { "user": "tamarasenior", "count": 1, "uuid": 102166057 } ], "_userbio": { "uuid": 84541169, "type": "organization", "name": "pharmaverse" }, "_downloads": { "count": 1736, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/metacore" }, "_devurl": "https://github.com/atorus-research/metacore", "_pkgdown": "https://atorus-research.github.io/metacore/", "_searchresults": 222, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/metacore.html", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/atorus-research/metacore", "_realowner": "atorus-research", "_cranurl": true, "_releases": [ { "version": "0.0.3", "date": "2022-02-14" }, { "version": "0.0.4", "date": "2022-03-31" }, { "version": "0.1.0", "date": "2022-10-04" }, { "version": "0.1.1", "date": "2022-12-07" }, { "version": "0.1.2", "date": "2023-03-02" }, { "version": "0.1.3", "date": "2024-05-02" }, { "version": "0.2.0", "date": "2025-07-14" }, { "version": "0.2.1", "date": "2025-07-21" }, { "version": "0.3.0", "date": "2026-04-22" } ], "_exports": [ "%>%", "check_inconsistent_formats", "check_inconsistent_labels", "check_inconsistent_types", "create_tbl", "define_to_metacore", "get_control_term", "get_keys", "is_DatasetMeta", "is_metacore", "load_metacore", "metacore", "metacore_example", "read_all_sheets", "save_metacore", "select_dataset", "spec_to_metacore", "spec_type", "spec_type_to_codelist", "spec_type_to_derivations", "spec_type_to_ds_spec", "spec_type_to_ds_vars", "spec_type_to_value_spec", "spec_type_to_var_spec", "verify_DatasetMeta", "xml_to_codelist", "xml_to_derivations", "xml_to_ds_spec", "xml_to_ds_vars", "xml_to_value_spec", "xml_to_var_spec" ], "_help": [ { "page": "checks", "title": "Optional checks to consistency of metadata", "topics": [ "check_inconsistent_formats", "check_inconsistent_labels", "check_inconsistent_types" ] }, { "page": "check_structure", "title": "Column Validation Function", "topics": [ "check_structure" ] }, { "page": "check_words", "title": "Check Words in Column", "topics": [ "check_words" ] }, { "page": "create_tbl", "title": "Create table", "topics": [ "create_tbl" ] }, { "page": "define_to_metacore", "title": "Define XML to DataDef Object", "topics": [ "define_to_metacore" ] }, { "page": "get_control_term", "title": "Get Control Term", "topics": [ "get_control_term" ] }, { "page": "get_keys", "title": "Get Dataset Keys", "topics": [ "get_keys" ] }, { "page": "is_DatasetMeta", "title": "Is DatasetMeta object", "topics": [ "is_DatasetMeta" ] }, { "page": "is_metacore", "title": "Is metacore object", "topics": [ "is_metacore" ] }, { "page": "load_metacore", "title": "load metacore object", "topics": [ "load_metacore" ] }, { "page": "metacore", "title": "R6 Class wrapper to create your own metacore object", "concept": [ "Metacore" ], "topics": [ "metacore" ] }, { "page": "metacore_example", "title": "Get path to metacore example", "topics": [ "metacore_example" ] }, { "page": "MetaCore_filter", "title": "Select method to subset by a single dataframe", "topics": [ "MetaCore_filter" ] }, { "page": "read_all_sheets", "title": "Read in all Sheets", "topics": [ "read_all_sheets" ] }, { "page": "save_metacore", "title": "save metacore object", "topics": [ "save_metacore" ] }, { "page": "select_dataset", "title": "Select metacore object to single dataset", "topics": [ "select_dataset" ] }, { "page": "spec_to_metacore", "title": "Specification document to metacore object", "topics": [ "spec_to_metacore" ] }, { "page": "spec_type", "title": "Check the type of spec document", "topics": [ "spec_type" ] }, { "page": "spec_type_to_codelist", "title": "Spec to codelist", "concept": [ "spec builders" ], "topics": [ "spec_type_to_codelist" ] }, { "page": "spec_type_to_derivations", "title": "Spec to derivation", "concept": [ "spec builders" ], "topics": [ "spec_type_to_derivations" ] }, { "page": "spec_type_to_ds_spec", "title": "Spec to ds_spec", "concept": [ "spec builders" ], "topics": [ "spec_type_to_ds_spec" ] }, { "page": "spec_type_to_ds_vars", "title": "Spec to ds_vars", "concept": [ "spec builders" ], "topics": [ "spec_type_to_ds_vars" ] }, { "page": "spec_type_to_value_spec", "title": "Spec to value_spec", "concept": [ "spec builders" ], "topics": [ "spec_type_to_value_spec" ] }, { "page": "spec_type_to_var_spec", "title": "Spec to var_spec", "concept": [ "spec builders" ], "topics": [ "spec_type_to_var_spec" ] }, { "page": "verify_DatasetMeta", "title": "Verify that the Class Type of an object is DatasetMeta with warnings", "topics": [ "verify_DatasetMeta" ] }, { "page": "xml_to_codelist", "title": "XML to code list", "concept": [ "xml builder" ], "topics": [ "xml_to_codelist" ] }, { "page": "xml_to_derivations", "title": "XML to derivation table", "concept": [ "xml builder" ], "topics": [ "xml_to_derivations" ] }, { "page": "xml_to_ds_spec", "title": "XML to Data Set Spec", "concept": [ "xml builder" ], "topics": [ "xml_to_ds_spec" ] }, { "page": "xml_to_ds_vars", "title": "XML to Data Set Var table", "concept": [ "xml builder" ], "topics": [ "xml_to_ds_vars" ] }, { "page": "xml_to_value_spec", "title": "XML to value spec", "concept": [ "xml builder" ], "topics": [ "xml_to_value_spec" ] }, { "page": "xml_to_var_spec", "title": "XML to variable spec", "concept": [ "xml builder" ], "topics": [ "xml_to_var_spec" ] } ], "_pkglogo": "https://github.com/atorus-research/metacore/raw/HEAD/man/figures/metacore.PNG", "_readme": "https://github.com/atorus-research/metacore/raw/HEAD/README.md", "_rundeps": [ "cellranger", "cli", "cpp11", "crayon", "dplyr", "generics", "glue", "hms", "lifecycle", "magrittr", "pillar", "pkgconfig", "prettyunits", "progress", "purrr", "R6", "readxl", "rematch", "rlang", "stringi", "stringr", "tibble", "tidyr", "tidyselect", "utf8", "vctrs", "withr", "xml2" ], "_vignettes": [ { "source": "Building_Specification_Readers.Rmd", "filename": "Building_Specification_Readers.html", "title": "Building Specification Readers", "engine": "knitr::rmarkdown", "headings": [], "created": "2021-04-07 16:30:23", "modified": "2026-04-20 21:18:42", "commits": 14 }, { "source": "Example.Rmd", "filename": "Example.html", "title": "Example", "engine": "knitr::rmarkdown", "headings": [], "created": "2021-02-08 10:09:46", "modified": "2026-01-19 14:03:41", "commits": 11 } ], "_score": 9.689364317385818, "_indexed": false, "_nocasepkg": "metacore", "_universes": [ "pharmaverse" ], "_indexurl": "https://atorus-research.r-universe.dev/metacore", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.3.0", "date": "2026-05-21T09:55:56.000Z", "distro": "noble", "commit": "062ec1d504a16a7d042075a6ffc32874cac42462", "fileid": "496dbb03243ab946597145388f8f73dddf1ed1a07709c7adf1f8d28f3df0a758", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/pharmaverse/actions/runs/26218688324" }, { "r": "4.6.0", "os": "linux", "version": "0.3.0", "date": "2026-05-21T09:55:50.000Z", "distro": "noble", "commit": "062ec1d504a16a7d042075a6ffc32874cac42462", "fileid": "dfb92ba8639c286b41560943a1e25357e8a1ed6b1ad1550fcd93a563706096e5", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/pharmaverse/actions/runs/26218688324" }, { "r": "4.5.3", "os": "mac", "version": "0.3.0", "date": "2026-05-21T09:55:47.000Z", "commit": "062ec1d504a16a7d042075a6ffc32874cac42462", "fileid": "df6abd9b5385336c6febb73b15b84009fcd7810c5bdfb876ced3a77fbe6ef0cd", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/pharmaverse/actions/runs/26218688324" }, { "r": "4.6.0", "os": "mac", "version": "0.3.0", "date": "2026-05-21T09:55:23.000Z", "commit": "062ec1d504a16a7d042075a6ffc32874cac42462", "fileid": "3d71e143eac05d576ac20bd415b168a45ec20147c9c608726377059d2120da61", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/pharmaverse/actions/runs/26218688324" }, { "r": "4.6.0", "os": "wasm", "version": "0.3.0", "date": "2026-05-21T20:09:13.000Z", "commit": "062ec1d504a16a7d042075a6ffc32874cac42462", "fileid": "3e1a187a8fdbddf5d2878540ea880231e8e2f9b1e0c0e07ff4af044698691ee1", "status": "success", "buildurl": "https://github.com/r-universe/pharmaverse/actions/runs/26218688324" }, { "r": "4.7.0", "os": "win", "version": "0.3.0", "date": "2026-05-21T09:56:57.000Z", "commit": "062ec1d504a16a7d042075a6ffc32874cac42462", "fileid": "689499421497efee6324a6b5adcb4322fa2207b59e9fd457098fcf470f199e0f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/pharmaverse/actions/runs/26218688324" }, { "r": "4.5.3", "os": "win", "version": "0.3.0", "date": "2026-05-21T09:54:57.000Z", "commit": "062ec1d504a16a7d042075a6ffc32874cac42462", "fileid": "9e8d646a95a3b37f112befe17ece8b68f46c2d8b51c826b8ae51c9a9ed939b30", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/pharmaverse/actions/runs/26218688324" }, { "r": "4.6.0", "os": "win", "version": "0.3.0", "date": "2026-05-21T09:55:26.000Z", "commit": "062ec1d504a16a7d042075a6ffc32874cac42462", "fileid": "77d3fdb1103c9f06567f4e80b9cc084aecb7aaa339d9aad604651867774722b9", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/pharmaverse/actions/runs/26218688324" } ] }