exprs(USUBJID, STUDYID) and exprs(USUBJID) with
get_admiral_option("subject_keys") so the argument is flexible and can be
changed from the default by the user. (#281)bor_ne event object was updated such that CR and PR are additionally
considered as event. This ensures that the confirmed best overall response for a
patient with a single CR or PR assessment is derived as "NE" instead of
"MISSING". (#253)New vignette "Creating ADRS with iRECIST endpoints". (#233)
All vignettes and templates were updated to be in line with the changes in
{admiral} (see Breaking
Changes
for details)(#256).
The derive_*() functions were superseded in favor of
derive_extreme_event(). Any superseded functions can continue to be used as
demonstrated via the "Basic ADRS" vignette, as they will remain supported and
won't be deprecated in the near future. (#256)
The filter_pd() function was superseded in favor of filter_relative(). (#256)
The function call_aval_fun(), which was deprecated in admiralonco 0.4.0,
has been removed. (#256)
admiral::derive_extreme_event(). (#234)The ADRS vignette and template were split into two (#234):
{admiralonco} functions to cover standard
RECIST 1.1.admiral::derive_extreme_event(). This
should be used if non-standard ADRS parameters should be implemented or
non-standard response values should be considered. This version can also be
used as a starting point for implementing other response criteria than
RECIST 1.1, e.g., iRECIST or International Myeloma Working Group (IMWG)
criteria for the diagnosis of multiple myeloma.The ADRS vignette and template were updated such that test data from
{pharmaversesdtm} instead of {admiral.test} is used. (#226)
The "Create ADTR" vignette and the ADTR template were updated such that
test data from {pharmaversesdtm} instead of {admiral.test} is used. (#247)
The confirmed response derivation was fixed in the basic ADRS vignette and
template. When calling derive_param_confirmed_resp() the filter_source
argument has to be set to PARAMCD == "OVR" & ANL01FL == "Y" instead of
PARAMCD == "OVR" & AVALC %in% c("CR", "PR") & ANL01FL == "Y". Otherwise,
responses like CR, NE, NE, CR are considered as confirmed response.
(#245)
ADRS" and "Create ADTTE" vignette has been updated to include a link to "Creating and Using New Anti-Cancer Start Date" vignetteAdded a "Report a bug" link to {admiralonco} website (#211)
Added a section regarding dependencies to the {admiralonco} website (#223)
Vignettes and templates were updated due to changes in admiral and admiralonco: (#216)
AVAL variable is now populated via the set_values_to argument as
the aval_fun argument was deprecated.admiral::derive_param_extreme_event() calls were replaced by
admiral::derive_extreme_records() calls due to deprecation of
admiral::derive_param_extreme_event().admiral::derive_param_exist_flag() calls were updated as the
dataset_adsl argument was renamed to dataset_ref.Function derive_param_lasta(), which was deprecated in admiralonco 0.2.0,
has been removed. (#216)
The aval_fun argument of derive_param_bor(), derive_param_clinbenefit(),
derive_param_confirmed_bor(), derive_param_confirmed_resp(),
derive_param_response() was deprecated in favor of the set_values_to
argument. (#216)
The call_aval_fun() function was deprecated in favor or
admiraldev::process_set_values_to(). (#216)
vars()
are now expecting a list of expressions created by exprs(). For example,
instead of by_vars = vars(STUDYID, USUBJID) by_vars = exprs(STUDYID, USUBJID) must be used now. (#197)ADTR" (#16)admiral::derive_param_tte() enhancement (#203)subject_keys as a function argument now default to get_admiral_option("subject_keys")instead of vars(STUDYID, USUBJID) to allow users to change the variables that uniquely identify a subject once using set_admiral_options() to avoid several instances of find + replace in a script. (#175)derive_param_lasta() has been deprecated. Please use admiral::derive_param_extreme_event() instead (#89).ADRS vignette for filtering out assessments after progressive disease compared to source_pd argument (#168)