{ "_id": "6a1885e2acfb0bcc41dc3d16", "Package": "xportr", "Title": "Utilities to Output CDISC SDTM/ADaM XPT Files", "Version": "0.5.0.9000", "Authors@R": "c(\nperson(\"Eli\", \"Miller\", , \"Eli.Miller@AtorusResearch.com\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-2127-9456\")),\nperson(\"Ben\", \"Straub\", role = \"aut\"),\nperson(\"Zelos\", \"Zhu\", role = \"aut\"),\nperson(\"Ethan\", \"Brockmann\", role = \"aut\"),\nperson(\"Vedha\", \"Viyash\", role = \"aut\"),\nperson(\"Andre\", \"Verissimo\", role = \"aut\"),\nperson(\"Sophie\", \"Shapcott\", role = \"aut\"),\nperson(\"Celine\", \"Piraux\", role = \"aut\"),\nperson(\"Kangjie\", \"Zhang\", role = \"aut\"),\nperson(\"Adrian\", \"Chan\", role = \"aut\"),\nperson(\"Sadchla\", \"Mascary\", role = \"aut\"),\nperson(\"Seunghyun\", \"Kim\", role = \"aut\"),\nperson(\"Atorus/GSK JPT\", role = \"cph\")\n)", "Description": "Tools to build CDISC compliant data sets and check for\nCDISC compliance.", "License": "MIT + file LICENSE", "URL": "https://atorus-research.github.io/xportr/,\nhttps://github.com/atorus-research/xportr", "BugReports": "https://github.com/atorus-research/xportr/issues", "VignetteBuilder": "knitr", "Config/testthat/edition": "3", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.3", "Config/pak/sysreqs": "make libicu-dev libx11-dev zlib1g-dev", "Repository": "https://pharmaverse.r-universe.dev", "Date/Publication": "2026-05-28 15:47:02 UTC", "RemoteUrl": "https://github.com/atorus-research/xportr", "RemoteRef": "HEAD", "RemoteSha": "712302f8b9923d37d49b7edb84be01f367512e7e", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-28 18:07:13 UTC", "User": "root" }, "Author": "Eli Miller [aut, cre] (ORCID: ),\nBen Straub [aut],\nZelos Zhu [aut],\nEthan Brockmann [aut],\nVedha Viyash [aut],\nAndre Verissimo [aut],\nSophie Shapcott [aut],\nCeline Piraux [aut],\nKangjie Zhang [aut],\nAdrian Chan [aut],\nSadchla Mascary [aut],\nSeunghyun Kim [aut],\nAtorus/GSK JPT [cph]", "Maintainer": "Eli Miller ", "MD5sum": "1037a6b80ca92e8ddc7a31330d950af5", "_user": "pharmaverse", "_type": "src", "_file": "xportr_0.5.0.9000.tar.gz", "_fileid": "4435c94c8770e4089e568da1e535573361dedc3c2045ab1ea17f10500615fee3", "_filesize": 2228987, "_sha256": "4435c94c8770e4089e568da1e535573361dedc3c2045ab1ea17f10500615fee3", "_created": "2026-05-28T18:07:13.000Z", "_published": "2026-05-28T18:13:54.540Z", "_distro": "noble", "_jobs": [ { "job": 78356707228, "time": 162, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7273709466" }, { "job": 78356707028, "time": 182, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7273717343" }, { "job": 78356706996, "time": 102, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7273773523" }, { "job": 78356707007, "time": 116, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7273779936" }, { "job": 78356046729, "time": 211, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7273647365" }, { "job": 78356706984, "time": 106, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7273688772" }, { "job": 78356707181, "time": 140, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7273702330" }, { "job": 78356707220, "time": 275, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7273750878" }, { "job": 78356707141, "time": 135, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7273699555" } ], "_buildurl": "https://github.com/r-universe/pharmaverse/actions/runs/26592874412", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/atorus-research/xportr", "_commit": { "id": "712302f8b9923d37d49b7edb84be01f367512e7e", "author": "Eli Miller ", "committer": "GitHub ", "message": "Closes #302, Update label logging of labels longer than 40 characters to… (#360)\n\n* Per #302, Update label logging of labels longer than 40 characters to use verbose argument and standard xportr logging functions\n\n* Correct indent\n\n* Convert Test 5 xportr_label long label tests to use expect_snapshot()\n\n* tests: #302 new snaps who this?\n\n* Add GitHub release URL to .lycheeignore\n\n* Update .lycheeignore to use regex wildcard for cdisc-rules-engine releases URLs\n\n---------\n\nCo-authored-by: copilot-swe-agent[bot] <198982749+Copilot@users.noreply.github.com>\nCo-authored-by: Ben Straub ", "time": 1779983222 }, "_maintainer": { "name": "Eli Miller", "email": "eli.miller@atorusresearch.com", "orcid": "0000-0002-2127-9456" }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.1.0", "role": "Depends" }, { "package": "checkmate", "role": "Imports" }, { "package": "cli", "role": "Imports" }, { "package": "dplyr", "version": ">= 1.0.2", "role": "Imports" }, { "package": "glue", "version": ">= 1.4.2", "role": "Imports" }, { "package": "haven", "version": ">= 2.5.0", "role": "Imports" }, { "package": "lifecycle", "role": "Imports" }, { "package": "magrittr", "role": "Imports" }, { "package": "purrr", "version": ">= 0.3.4", "role": "Imports" }, { "package": "rlang", "version": ">= 0.4.10", "role": "Imports" }, { "package": "stringr", "version": ">= 1.4.0", "role": "Imports" }, { "package": "DT", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "labelled", "role": "Suggests" }, { "package": "metacore", "role": "Suggests" }, { "package": "pharmaverseadam", "role": "Suggests" }, { "package": "readxl", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" }, { "package": "withr", "role": "Suggests" } ], "_owner": "atorus-research", "_selfowned": false, "_usedby": 1, "_updates": [ { "week": "2025-29", "n": 2 }, { "week": "2025-47", "n": 3 }, { "week": "2025-49", "n": 5 }, { "week": "2025-50", "n": 2 }, { "week": "2025-51", "n": 6 }, { "week": "2026-02", "n": 8 }, { "week": "2026-03", "n": 6 }, { "week": "2026-19", "n": 1 }, { "week": "2026-20", "n": 1 }, { "week": "2026-21", "n": 1 }, { "week": "2026-22", "n": 5 } ], "_tags": [ { "name": "v0.4.3", "date": "2025-07-15" }, { "name": "v0.5.0", "date": "2026-01-13" } ], "_topics": [ "clinical-programmers", "xpt" ], "_stars": 52, "_contributors": [ { "user": "bms63", "count": 323, "uuid": 10111024 }, { "user": "elimillera", "count": 258, "uuid": 24767886 }, { "user": "averissimo", "count": 174, "uuid": 211358 }, { "user": "vedhav", "count": 117, "uuid": 49812166 }, { "user": "eeethb", "count": 101, "uuid": 59264453 }, { "user": "cpiraux", "count": 75, "uuid": 69685640 }, { "user": "sadchla-codes", "count": 31, "uuid": 112789549 }, { "user": "kaz462", "count": 8, "uuid": 47867131 }, { "user": "schmetti-kim", "count": 7, "uuid": 247128476 }, { "user": "zdz2101", "count": 3, "uuid": 43018762 }, { "user": "bundfussr", "count": 3, "uuid": 80953585 }, { "user": "iaugusty", "count": 3, "uuid": 55379552 }, { "user": "copilot", "count": 3, "uuid": 198982749 }, { "user": "chiara-cattani", "count": 3, "uuid": 189350368 }, { "user": "liamhobby", "count": 2, "uuid": 102362579 }, { "user": "mstackhouse", "count": 2, "uuid": 31387567 }, { "user": "ynsec37", "count": 1, "uuid": 98389771 }, { "user": "sophie-gem", "count": 1, "uuid": 90790226 }, { "user": "adchan11", "count": 1, "uuid": 82629083 }, { "user": "olivroy", "count": 1, "uuid": 52606734 }, { "user": "siddharthlokineni", "count": 1, "uuid": 83827278 } ], "_userbio": { "uuid": 84541169, "type": "organization", "name": "pharmaverse" }, "_downloads": { "count": 1273, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/xportr" }, "_devurl": "https://github.com/atorus-research/xportr", "_pkgdown": "https://atorus-research.github.io/xportr/", "_searchresults": 188, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "extra/xportr.html", "manual.pdf" ], "_homeurl": "https://github.com/atorus-research/xportr", "_realowner": "atorus-research", "_cranurl": true, "_releases": [ { "version": "0.1.0", "date": "2022-06-21" }, { "version": "0.2.0", "date": "2023-02-23" }, { "version": "0.3.0", "date": "2023-06-21" }, { "version": "0.3.1", "date": "2023-09-14" }, { "version": "0.3.2", "date": "2024-02-19" }, { "version": "0.4.0", "date": "2024-03-28" }, { "version": "0.4.1", "date": "2024-10-07" }, { "version": "0.4.2", "date": "2025-01-07" }, { "version": "0.4.3", "date": "2025-07-15" }, { "version": "0.5.0", "date": "2026-01-13" } ], "_exports": [ "xportr", "xportr_df_label", "xportr_format", "xportr_label", "xportr_length", "xportr_metadata", "xportr_options", "xportr_order", "xportr_split", "xportr_type", "xportr_write", "xpt_validate" ], "_datasets": [ { "name": "adsl_xportr", "title": "Analysis Dataset Subject Level", "object": "adsl_xportr", "file": "adsl_xportr.rda", "class": [ "tbl_df", "tbl", "data.frame" ], "fields": [ "STUDYID", "USUBJID", "SUBJID", "RFSTDTC", "RFENDTC", "RFXSTDTC", "RFXENDTC", "RFICDTC", "RFPENDTC", "DTHDTC", "DTHFL", "SITEID", "AGE", "AGEU", "SEX", "RACE", "ETHNIC", "ARMCD", "ARM", "ACTARMCD", "ACTARM", "COUNTRY", "DMDTC", "DMDY", "TRT01P", "TRT01A", "TRTSDTM", "TRTSTMF", "TRTEDTM", "TRTETMF", "TRTSDT", "TRTEDT", "TRTDURD", "SCRFDT", "EOSDT", "EOSSTT", "FRVDT", "RANDDT", "DTHDT", "DTHDTF", "DTHADY", "LDDTHELD", "LSTALVDT", "SAFFL", "RACEGR1", "AGEGR1", "REGION1", "LDDTHGR1", "DTH30FL", "DTHA30FL", "DTHB30FL" ], "rows": 306, "table": true, "tojson": true }, { "name": "dataset_spec", "title": "Example Dataset Specification", "object": "dataset_spec", "file": "dataset_spec.rda", "class": [ "tbl_df", "tbl", "data.frame" ], "fields": [ "Dataset", "Description", "Class", "Structure", "Purpose", "Key, Variables", "Repeating", "Reference Data", "Comment" ], "rows": 1, "table": true, "tojson": true }, { "name": "var_spec", "title": "Example Dataset Variable Specification", "object": "var_spec", "file": "var_spec.rda", "class": [ "tbl_df", "tbl", "data.frame" ], "fields": [ "Order", "Dataset", "Variable", "Label", "Data Type", "Length", "Significant Digits", "Format", "Mandatory", "Assigned Value", "Codelist", "Common", "Origin", "Pages", "Method", "Predecessor", "Role", "Comment", "Developer Notes" ], "rows": 216, "table": true, "tojson": true } ], "_help": [ { "page": "adsl_xportr", "title": "Analysis Dataset Subject Level", "topics": [ "adsl_xportr" ] }, { "page": "dataset_spec", "title": "Example Dataset Specification", "topics": [ "dataset_spec" ] }, { "page": "var_spec", "title": "Example Dataset Variable Specification", "topics": [ "var_spec" ] }, { "page": "xportr", "title": "Wrapper to apply all core xportr functions and write xpt", "topics": [ "xportr" ] }, { "page": "xportr_df_label", "title": "Assign Dataset Label", "topics": [ "xportr_df_label" ] }, { "page": "xportr_format", "title": "Assign SAS Format", "topics": [ "xportr_format" ] }, { "page": "xportr_label", "title": "Assign Variable Label", "topics": [ "xportr_label" ] }, { "page": "xportr_length", "title": "Assign SAS Length", "topics": [ "xportr_length" ] }, { "page": "metadata", "title": "Set variable specifications and domain", "topics": [ "xportr_metadata" ] }, { "page": "xportr_options", "title": "Get or set xportr options", "topics": [ "xportr_options" ] }, { "page": "xportr_order", "title": "Order variables of a dataset according to Spec", "topics": [ "xportr_order" ] }, { "page": "xportr_split", "title": "Deprecated - Split xpt file output", "topics": [ "xportr_split" ] }, { "page": "xportr_type", "title": "Coerce variable type", "topics": [ "xportr_type" ] }, { "page": "xportr_write", "title": "Write xpt v5 transport file", "topics": [ "xportr_write" ] }, { "page": "xpt_validate", "title": "Validate Dataset Can be Written to xpt", "topics": [ "xpt_validate" ] } ], "_pkglogo": "https://github.com/atorus-research/xportr/raw/HEAD/man/figures/logo.png", "_readme": "https://github.com/atorus-research/xportr/raw/HEAD/README.md", "_rundeps": [ "backports", "bit", "bit64", "checkmate", "cli", "clipr", "cpp11", "crayon", "dplyr", "forcats", "generics", "glue", "haven", "hms", "lifecycle", "magrittr", "pillar", "pkgconfig", "prettyunits", "progress", "purrr", "R6", "readr", "rlang", "stringi", "stringr", "tibble", "tidyselect", "tzdb", "utf8", "vctrs", "vroom", "withr" ], "_vignettes": [ { "source": "deepdive.Rmd", "filename": "deepdive.html", "title": "Deep Dive into xportr", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "What goes in a Submission to a Health Authority?", "Study Data Standardization Plan", "SDTM and ADaM Data Packages", "What is {xportr} validating in these Data Packages?", "{xportr} in action", "Using options() and xportr_metadata() to enhance your experience.", "You've got options() or xportr_options()", "Are we being too verbose?", "Going meta", "Warnings and Errors", "Setting up our metadata object", "xportr_type()", "xportr_length()", "xportr_label()", "xportr_order()", "xportr_format()", "xportr_write()", "xportr()", "Future Work" ], "created": "2023-06-21 12:43:33", "modified": "2026-05-21 12:22:49", "commits": 10 }, { "source": "xportr.Rmd", "filename": "xportr.html", "title": "Getting Started", "engine": "knitr::rmarkdown", "headings": [ "Getting Started with xportr", "Preparing your Specification Files", "xportr_type()", "xportr_length()", "xportr_order()", "xportr_format()", "xportr_label()", "xportr_write()" ], "created": "2021-05-17 15:48:23", "modified": "2026-05-21 12:22:49", "commits": 12 }, { "source": "agency_standards.Rmd", "filename": "agency_standards.html", "title": "Standards in Different Regulatory Agencies", "engine": "knitr::rmarkdown", "headings": [ "Motivation", "File name - character", "XPT ", "FDA ", "NMPA ", "PMDA ", "File name - length", "Variable name", "Variable length", "Label character", "Label length", "Values character", "Values length", "Format", "Type", "File size" ], "created": "2024-03-07 01:46:02", "modified": "2024-03-07 01:46:02", "commits": 1 } ], "_score": 10.090624791149684, "_indexed": false, "_nocasepkg": "xportr", "_universes": [ "pharmaverse" ], "_indexurl": "https://atorus-research.r-universe.dev/xportr", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.5.0.9000", "date": "2026-05-28T18:09:35.000Z", "distro": "noble", "commit": "712302f8b9923d37d49b7edb84be01f367512e7e", "fileid": "f610d13648e6aab3ab0c9e5a423e9bee182acef2a87c0214cccde274214d9d13", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/pharmaverse/actions/runs/26592874412" }, { "r": "4.6.0", "os": "linux", "version": "0.5.0.9000", "date": "2026-05-28T18:09:45.000Z", "distro": "noble", "commit": "712302f8b9923d37d49b7edb84be01f367512e7e", "fileid": "f1fdbb75b3003ed70e478eac2b28f277feed0a371b1b6b5d3a7841f8a0bda848", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/pharmaverse/actions/runs/26592874412" }, { "r": "4.5.3", "os": "mac", "version": "0.5.0.9000", "date": "2026-05-28T18:12:44.000Z", "commit": "712302f8b9923d37d49b7edb84be01f367512e7e", "fileid": "9ec7c33ecd6025e84bd2fa8ea5b2d04a940f90759ca4a1e9f605fa4528b684c7", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/pharmaverse/actions/runs/26592874412" }, { "r": "4.6.0", "os": "mac", "version": "0.5.0.9000", "date": "2026-05-28T18:12:58.000Z", "commit": "712302f8b9923d37d49b7edb84be01f367512e7e", "fileid": "e4f8cf88ada98a79f0293babac2fab6bc974ed00bd6f9ebf6abe5834fe5f4749", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/pharmaverse/actions/runs/26592874412" }, { "r": "4.6.0", "os": "wasm", "version": "0.5.0.9000", "date": "2026-05-28T18:09:22.000Z", "commit": "712302f8b9923d37d49b7edb84be01f367512e7e", "fileid": "9cd67924f1bb015d66a51aa941982db43fdc88cdea6f62512f0975608bd0713f", "status": "success", "buildurl": "https://github.com/r-universe/pharmaverse/actions/runs/26592874412" }, { "r": "4.7.0", "os": "win", "version": "0.5.0.9000", "date": "2026-05-28T18:08:43.000Z", "commit": "712302f8b9923d37d49b7edb84be01f367512e7e", "fileid": "e5f37de4753fb968042f55154c05ebc6cda9e844af4b259a12e8990f1a7dac6c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/pharmaverse/actions/runs/26592874412" }, { "r": "4.5.3", "os": "win", "version": "0.5.0.9000", "date": "2026-05-28T18:09:59.000Z", "commit": "712302f8b9923d37d49b7edb84be01f367512e7e", "fileid": "eec27f39f9ceeddd751814de24c4776a490b71a1d980d2f96d9f170f8ec508b0", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/pharmaverse/actions/runs/26592874412" }, { "r": "4.6.0", "os": "win", "version": "0.5.0.9000", "date": "2026-05-28T18:08:30.000Z", "commit": "712302f8b9923d37d49b7edb84be01f367512e7e", "fileid": "e6244871e226eda74989228dd4636189d04417e065a454625a6eb954084393dd", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/pharmaverse/actions/runs/26592874412" } ] }